FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27389
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACA490.17890393953777065No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG440.16064843550330424No Hit
GTATAGGGGTTAGTCCTTGCTATGTTATGCTTGGTTATAATTTTTCATCT370.1350907298550513No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG330.12048632662747817No Hit
TTATCATGTCCTACAAGCATTAATTAATTAACACACTTTAGTAGGTATGC310.11318412501369164No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC300.10953302420679835No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA280.10223082259301179No Hit
CTAATACACCAGTCTTGTAAACCGGAGATGAAAACCTTTTCCAAGGACAA280.10223082259301179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)