EGAF00005577486 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577486
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59885
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	102	0.1703264590465058	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	88	0.1469483176087501	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	78	0.1302496451532103	No Hit
ATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTA	73	0.12190030892544042	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	71	0.11856057443433247	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	68	0.11355097269767055	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA	68	0.11355097269767055	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	67	0.11188110545211655	No Hit
GTCTAGGCCATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCCACCG	66	0.11021123820656258	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	64	0.10687150371545462	No Hit
CCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAA	63	0.10520163646990065	No Hit
CCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAAC	62	0.10353176922434665	No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	61	0.10186190197879269	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	60	0.10019203473323872	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTATA	15	0.0064605647	149.39674	145
GGATTTG	15	0.0064605647	149.39674	145
AAGGAGC	10	0.007556099	141.83946	6
TGGTAGC	10	0.007556099	141.83946	6
TCTAGCA	35	3.8047983E-5	81.05112	3
CAGAACT	30	0.0021028423	70.91974	4
GCCATGC	40	7.374856E-5	70.91973	1
TGCACTA	40	7.374856E-5	70.91973	5
ATGCACT	45	1.321231E-4	63.039764	4
TCATACT	35	0.0038739708	60.78834	3
CCATATG	50	2.2244836E-4	56.73579	8
ATGGGTG	40	0.0065718405	53.1898	5
AGGAGCC	40	0.0065718405	53.1898	7
GAATCGT	40	0.0065718405	53.1898	6
AAGAATC	40	0.0065718405	53.1898	4
AAAGGAG	40	0.0065718405	53.1898	5
TATACAA	40	0.0065718405	53.1898	2
TATCTAG	45	0.009056547	49.043076	115-119
ATAGGGA	45	0.009339462	48.663223	105-109
CATATGT	60	5.4709497E-4	47.279823	9