EGAF00005577493 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577493
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64435
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	112	0.17381857686040195	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	102	0.15829906106929464	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	93	0.14433149685729804	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	90	0.13967564211996586	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	87	0.13501978738263365	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	86	0.13346783580352292	No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT	83	0.12881198106619074	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	77	0.11950027159152635	No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT	77	0.11950027159152635	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	72	0.1117405136959727	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	67	0.10398075580041902	No Hit
GCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCAT	67	0.10398075580041902	No Hit
CTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGC	65	0.10087685264219756	No Hit
TCCTAACCCTACTCCTAATCACATAACCTATTCCCCCGAGCAATCTCAAT	65	0.10087685264219756	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA	65	0.10087685264219756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTGGG	10	0.007589496	141.63869	2
GCATTAC	25	0.0010259232	84.98322	6
GCAGCTC	25	0.0010259232	84.98322	8
TGCAGCT	25	0.0010259232	84.98322	7
AGCAATG	30	0.0021154245	70.81935	2
ATTAGAG	30	0.0021154245	70.81935	3
CAATGCA	30	0.0021154245	70.81935	4
ATGCAGC	30	0.0021154245	70.81935	6
CCGTGCG	35	0.0038971135	60.702297	9
CTGACTT	35	0.0038971135	60.702297	9
GCTTCAC	35	0.0038971135	60.702297	8
GAGGCAC	35	0.0038971135	60.702297	7
GCTCGGA	40	0.00661104	53.11451	1
ACCCAAT	40	0.00661104	53.11451	7
TCCTGTG	55	3.5887363E-4	51.50498	2
TGGACCA	55	3.5887363E-4	51.50498	5
GGCACCG	60	5.5124395E-4	47.2129	9
TTGGTGT	95	7.0863374E-4	44.83251	145
GTGGGAC	70	0.001177601	40.468197	9
GCAATGC	70	0.001177601	40.468197	3