EGAF00005577507 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577507
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	111491
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	215	0.19284067772286553	No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	194	0.17400507664295772	No Hit
CTCCTAGCCTTACTACTAATAATCATTACATTTTGACTACCACAACTCAA	170	0.1524786754087774	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	146	0.13095227417459704	No Hit
CCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAG	144	0.12915840740508203	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	130	0.11660134001847684	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	130	0.11660134001847684	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	125	0.11211667309468924	No Hit
GTTGTATATAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATT	120	0.10763200617090168	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	112	0.10045653909284158	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTGTG	45	1.6004915E-5	96.53321	145
CACCGCA	25	9.874804E-4	85.84607	9
CAATGCA	55	4.3319822E-5	78.98172	145
TTAGAGT	30	0.0020362572	71.53839	4
ATTGTGG	40	7.0911075E-5	71.53839	8
CCAGACC	30	0.0020362572	71.53839	8
GCTAGTC	55	4.3709697E-6	65.034904	7
ATGCTTC	45	1.2704465E-4	63.589684	6
TATGCAT	35	0.003751453	61.318623	4
TGCATCG	35	0.003751453	61.318623	6
ATGCATC	35	0.003751453	61.318623	5
GCATCGG	35	0.003751453	61.318623	7
AGCTAGT	60	7.3234896E-6	59.615326	6
ATTAGAG	65	1.1767923E-5	55.029533	3
CTAAGTG	80	2.7671468E-4	54.29993	145
CTTCACT	40	0.0063642547	53.653793	9
CCAAGTC	40	0.0063642547	53.653793	9
CTCTAGC	95	3.450441E-8	52.7125	2
GAGGCAC	70	1.8248096E-5	51.098854	7
AACCACG	60	5.261283E-4	47.69226	7