EGAF00005577509 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577509
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	75104
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	125	0.16643587558585426	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	97	0.12915423945462293	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA	96	0.1278227524499361	No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	88	0.1171708564124414	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	87	0.11583936940775458	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGCTATAATTTTTCATCT	85	0.11317639539838091	No Hit
GGATTAGACTGAGCCGAATTGGTATATAGTTTAAACAAAACGAATGATTT	83	0.11051342138900723	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	82	0.1091819343843204	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	79	0.10518747337025991	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	77	0.10252449936088623	No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA	76	0.1011930123561994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCAG	25	0.0010046278	85.4472	5
CAGCACA	25	0.0010046278	85.4472	9
CCCAGCA	25	0.0010046278	85.4472	7
TGTAACG	40	0.001219992	81.32665	145
CATGGAG	45	0.0019470339	72.29036	145
CCCTGGG	65	1.563767E-7	65.728615	2
CTAAGGA	35	0.0038164333	61.033714	2
TAAGGAC	35	0.0038164333	61.033714	3
CTACCCA	50	2.1842383E-4	56.9648	4
CCAGCAC	40	0.006474355	53.4045	8
CCTGGGG	80	6.56828E-7	53.4045	3
GACTGCA	40	0.006474355	53.4045	7
TTAGAGG	185	4.5783963E-9	46.89104	145
CTGGGGT	100	3.0564406E-6	42.7236	4
TGTGGTG	75	0.0016110836	37.976532	8
GTCCCAC	75	0.0016110836	37.976532	1
AAGGACT	75	0.0016110836	37.976532	4
AGAGTTT	85	0.0029775153	33.508705	6
GTGGTGG	85	0.0029775153	33.508705	9
ACCCTGG	130	1.8489205E-5	32.864307	1