EGAF00005577544 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577544
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45634
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	64	0.1402463075776833	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA	61	0.1336722619099794	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	56	0.12271551913047289	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	55	0.12052417057457158	No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC	55	0.12052417057457158	No Hit
CTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAA	54	0.11833282201867028	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	52	0.11395012490686769	No Hit
GGCTAGGAGGGTGTCGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	51	0.11175877635096639	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	50	0.10956742779506508	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	50	0.10956742779506508	No Hit
CCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAAC	49	0.10737607923916377	No Hit
GGTTTAGGTTATGTACGTAGTCTAGGCCATATGTGTTGGAGATTGAGACT	47	0.10299338212736119	No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA	46	0.10080203357145988	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACAAT	10	0.0076563805	141.17873	1
CTTCTGG	15	1.3595897E-4	141.17873	1
CTGGCCA	15	1.3595897E-4	141.17873	4
CCTGTGT	30	0.0021388726	70.58936	8
TGGCCAC	30	0.0021388726	70.58936	5
GGCCACA	30	0.0021388726	70.58936	6
TTGACTC	30	0.0021388726	70.58936	9
CCAAGTA	30	0.0021388726	70.58936	2
GAGCATG	35	0.003940266	60.50517	1
GCATGCC	35	0.003940266	60.50517	3
AGGAGCC	40	0.0066841696	52.94202	7
CTAGTCA	40	0.0066841696	52.94202	8
AGCATGC	40	0.0066841696	52.94202	2
TTCTGGC	40	0.0066841696	52.94202	2
AGGGTTG	80	0.0022987106	35.29468	5
TGCCTGT	80	0.0022987106	35.29468	6
ATGCCTG	80	0.0022987106	35.29468	5
AATACCA	80	0.0022987106	35.29468	5
TATAGGG	85	0.0030944694	33.218525	2
CAGGGTT	90	0.004094133	31.373053	4