EGAF00005577568 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577568
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66048
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	99	0.14989098837209303	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	86	0.13020833333333331	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	83	0.12566618217054265	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	76	0.11506782945736435	No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT	76	0.11506782945736435	No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA	75	0.11355377906976745	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	72	0.10901162790697674	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	72	0.10901162790697674	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	71	0.10749757751937984	No Hit
GAGTAGGGCTGAGACTGGGGTGGGGCCTTCTATGGCTGAGGGGAGTCAGG	70	0.10598352713178294	No Hit
ATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTA	67	0.10144137596899225	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGAATCG	55	3.6790516E-7	98.43376	145
GCATTAC	40	6.804603E-7	88.86277	6
GTAAAGC	25	0.0010105969	85.308266	3
ATCTAGG	40	7.293231E-5	71.09022	1
TTGACAG	35	0.0038390558	60.93447	9
CTGTGAC	50	2.1999146E-4	56.872177	9
ATTACTT	65	1.2159286E-5	54.684784	8
GTCGCCC	40	0.0065126866	53.317665	9
TTACTTA	90	8.3152656E-5	39.494564	9
AATATTT	115	0.001670515	37.661613	145
GTATAGG	100	1.5460396E-4	35.545113	1
GGCCTTC	80	0.002227529	35.54511	6
TCCGAGG	85	0.002998742	33.45422	3
ATATAAC	95	0.0051689926	29.932722	2
GGGCTGT	120	4.5072415E-4	29.620928	6
AGCATTA	145	3.935298E-5	29.416643	5
AGGCCTT	125	5.7238084E-4	28.436087	5
CTACTAG	105	0.0084271245	27.08199	1
CCTTCTT	190	8.181012E-6	26.191132	8
TAGCATT	230	1.2782548E-6	24.727034	4