FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005577569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005577569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66048
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC930.14080668604651161No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA840.12718023255813954No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN830.12566618217054265No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT810.12263808139534883No Hit
GTGGGTGGTTGTGTTGATTCAAATTATGTGTTTTTTGGAAAGTCATGTCA780.11809593023255813No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT750.11355377906976745No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG750.11355377906976745No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA730.11052567829457365No Hit
GGTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTC710.10749757751937984No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC710.10749757751937984No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC680.10295542635658916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)