EGAF00005577573 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005577573
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	139716
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC	201	0.14386326548140513	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	193	0.13813736436771737	No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT	186	0.13312720089324057	No Hit
GGCTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTT	175	0.1252540868619199	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	172	0.12310687394428699	No Hit
GACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTA	171	0.122391136305076	No Hit
GGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATC	161	0.1152337599129663	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	156	0.11165507171691144	No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA	154	0.11022359643848952	No Hit
ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC	141	0.10091900712874688	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTGTGG	55	4.976573E-8	77.613434	8
CGAATCA	45	0.002020137	71.67207	145
ACTGATC	30	0.0020823188	71.14565	3
TACTGAT	30	0.0020823188	71.14565	2
AGAATCG	70	1.5055192E-4	61.433212	145
TCAGGAT	35	0.0038361873	60.981983	3
TCTAGTG	60	7.576462E-6	59.28804	2
CTAGTGA	60	7.576462E-6	59.28804	3
CCTTCTG	100	8.421921E-10	56.91652	9
CCAGAAG	65	1.2173983E-5	54.72742	3
ATCTAGG	40	0.0065077925	53.359234	1
TATGGTC	40	0.0065077925	53.359234	3
CCTCAGG	40	0.0065077925	53.359234	1
TATCAGG	55	3.5225012E-4	51.74229	2
AAGCGGG	55	3.5225012E-4	51.74229	7
ACTCGCA	55	3.5225012E-4	51.74229	6
TACTCGC	55	3.5225012E-4	51.74229	5
ATTTTTG	90	5.20842E-4	47.781384	145
GCATTAC	60	5.410779E-4	47.430435	6
CAGATAC	60	5.410779E-4	47.430435	9