FastQCFastQC Report
Wed 8 May 2024
EGAF00005578198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005578198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15142084
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN13777699.098939089229725No Hit
AGCCTCGCCCTGGGAAAACCACCTTCGTGATCATGGTATCTCCCCTGCCC214370.14157232254159996No Hit
CGCCCTGGGAAAACCACCTTCGTGATCATGGTATCTCCCCTGCCCCC205270.13556258174238103No Hit
TGCCTCGCCCTGGGAAAACCACCTTCGTGATCATGGTATCTCCCCTGCCC182190.12032029408897746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)