FastQCFastQC Report
Thu 9 May 2024
EGAF00005578253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005578253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10718922
Total Bases805.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGG2068531.9297929399990037No Hit
CGGGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGG1489311.3894214362227844No Hit
CCGGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGG976320.9108378622402513No Hit
GCGGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGG595980.5560074044759351No Hit
GGGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT530930.4953203316527539No Hit
GGCACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT465240.434036183862519No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN347510.3242023778137391No Hit
GGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT300500.2803453556243809No Hit
CGGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT283510.2644948811083801No Hit
CGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT249470.2327379562982173No Hit
CCGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT199880.1864739756479243No Hit
CGCACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT190720.1779283401819698No Hit
GGGAGCCGGGTCCCCGTCCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC174190.16250701329853878No Hit
GCGGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT172040.16050121458109312No Hit
GGGGGATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTC171520.1600160911703621No Hit
GCCCCCCCCGCCGGGCGTCGGGACCGGGGTCCGGTGCGGAGAGCCGTTCG165910.15478235591228295No Hit
GCCACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATTATAT159070.14840111720189772No Hit
GGCGCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT144210.13453778281062218No Hit
CGGAGCCGGGTCCCCGTCCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC139890.13050752678301047No Hit
GGGGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGGCTGGACGAG135260.12618806256823215No Hit
CGGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGGC129280.12060914334482516No Hit
CCCCCCCCCGCCGGGCGTCGGGACCGGGGTCCGGTGCGGAGAGCCGTTCG118990.11100929739016666No Hit
CGGGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGGCTGGACGAG116710.10888221782003825No Hit
GGCAGCCGGGTCCCCGTCCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC111560.10407763019452888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)