FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005578348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005578348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3756368
Sequences flagged as poor quality0
Sequence length20-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG372880.9926609959407597No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT89590.2385016590493796No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC69750.18568468265090107No Hit
GATTTTACACTGAAGATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTA64380.17138895869627258No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC63130.1680612762114894No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC62800.16718276803550663No Hit
CTACAAACGTTCGCTTTCGGCCCTGGGACCAAACTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCAT59650.15879700817385303No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG56640.15078394875049514No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA54470.14500709195691155No Hit
GTGTAAAATCTGTGCCTGATCCACTGCCACTGAATCTGTCAGGAACCCCG53730.14303710392591992No Hit
GGATGGGAGGGGGTCAGGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCCCTGTTGAAG51640.13747321881136249No Hit
GTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTT51240.13640836041623186No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT50990.13574282391927522No Hit
GTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAG49760.13246838435424857No Hit
GAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCT47030.12520072580748212No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC46490.12376316697405579No Hit
GGTCTAGTCAGAGTCTCCTGCATAGAAATGGATTCAGTTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTC44390.11817266039962006No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT41050.10928109280027942No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT40550.10795001980636615No Hit
GTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGC40130.106831918491479No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG39580.1053677381981744No Hit
CGTTTGTAGAGCTTGCATGCAATAATAAACCCCAACATCCTCAGCCTCCACTCTGCTGATCTTCAGTGTAAAAT38630.10283869950973919No Hit
GGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCA38520.10254586345107829No Hit
GTGCAGCCACAGTTCGTTTGATTTCCAGTTTGGTCCCAGGGCCGAAAGCG38440.10233289177205215No Hit
CCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGATTTCAACTG38350.10209329863314777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)