EGAF00005578356 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005578356
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2453773
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	53592	2.184065111157389	No Hit
GTATAATAGTTTTCCTCCGACGTTCGGCCAAGGGACCAAGGTGGAAGTCACACGAACTGTGGCTGCACCAT	5244	0.2137117003080562	No Hit
CTATTATACTGTTGGCAGTAATAAGTTGCAAAATCATCAGGCTGCAGGCTGCTGATGGTGAGAGTGAATTCTGTC	4009	0.1633810462499995	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	3706	0.15103271574020907	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	3044	0.1240538550224491	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	2738	0.11158326381454194	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	2463	0.10037603315384104	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	365	36.63757	56
CCGTATC	375	35.501495	55
GTATCAA	10385	32.483604	1
CGACGAA	415	30.000359	22
TATCAAC	11540	29.114256	2
TGGTCGC	460	29.047802	49
GTCGCCG	480	28.071274	51
GCCGTAT	475	27.928732	54
TCAACGC	11715	27.7537	4
ATCAACG	11800	27.689709	3
AACGCAG	11895	27.443386	6
CAACGCA	11920	27.358469	5
TGCCGAC	490	26.704197	19
CCGACGA	470	26.478294	21
GTGGTAT	2295	26.182161	1
ACGCAGA	12585	25.912828	7
GCCGACG	485	25.643631	20
AGAGTAC	12810	25.563684	11
TCTCGGT	530	25.342985	43
CAGAGTA	13110	24.97463	10