EGAF00005578387 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005578387
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1255472
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT	11393	0.9074674704015702	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCC	2077	0.16543578829316782	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1676	0.1334956096193304	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1589	0.1265659449195203	No Hit
ATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTT	1442	0.11485720111639287	TruSeq Adapter, Index 3 (95% over 21bp)
GTATGTACAGGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC	1335	0.10633451004881034	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	1335	0.10633451004881034	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1310	0.10434322708909478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	3070	0.0	52.677467	70
AAGGGGG	2200	0.0	50.842056	69
ATCGCGT	30	6.5539917E-4	45.649445	37
AATCGCG	60	3.2270327E-7	39.724125	36
CTTATAC	2385	0.0	39.652843	1
AAAGGGG	2610	0.0	38.96844	68
TTATACA	2485	0.0	38.575413	2
CGTATGC	2460	0.0	37.46607	41
GGTATCA	2110	0.0	37.453053	1
TCGTATG	2455	0.0	37.336384	40
CCGTCTT	2490	0.0	37.076256	47
TGCCGTC	2470	0.0	37.042927	45
GCCGTCT	2480	0.0	36.9166	46
ATGCCGT	2505	0.0	36.652813	44
GTATCAA	5315	0.0	36.31808	1
TATGCCG	2575	0.0	36.03887	43
AATCTCG	2385	0.0	35.8338	36
ATCTCGT	2405	0.0	35.58948	37
CGTAGAG	2685	0.0	35.209736	28
CTTGAAA	2745	0.0	34.85989	57