EGAF00005578391 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005578391
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2645437
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCTCAGGATCTCGTATGCCGT	14477	0.5472441793170656	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	5058	0.1911971443659403	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	4213	0.15925535176229863	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	3721	0.14065729027000076	No Hit
CGTATACACTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAG	3586	0.13555416364101658	No Hit
CCCTTGGACAGCCGGCCTCCATCTCCTGCAAATCTAGTCAAAGCCTCGTA	3352	0.12670874415077735	No Hit
GTGCACACTGGCCTCTCGGTTTCGGCGGAGGGACCAAGGTGGAGATCAAA	3351	0.12667094321278488	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	3255	0.12304205316550725	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	3108	0.11748531528061336	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	2999	0.11336501303943357	No Hit
GTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAG	2883	0.10898010423230642	No Hit
GGATGGGAGGGGGTCAGGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCCCTGTTGAAG	2763	0.10444399167320938	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	2703	0.10217593539366086	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	2701	0.10210033351767592	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGGGGG	2955	46.41753	69
AGGGGGG	4790	41.45892	70
CTTATAC	3200	39.405903	1
TCGTATG	2960	38.817123	40
CGTATGC	3085	38.487206	41
GCCGTCT	3085	38.17884	46
CCGTCTT	3145	37.444122	47
TGCCGTC	3210	37.34813	45
ATGCCGT	3235	37.269405	44
ATCTCGT	2850	37.019543	37
GTATCAA	7505	37.017563	1
TTATACA	3420	36.86893	2
ACGAGAC	3350	36.091263	22
CCCACGA	3400	35.53899	19
TCTCCGA	3460	35.285507	11
GGTATCA	3125	35.134678	1
TATGCCG	3440	35.06302	43
CGAGCCC	3510	34.88291	15
TACACAT	3655	34.49712	5
TATCAAC	8305	34.33117	2