EGAF00005578399 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005578399
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2523129
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGT	15850	0.6281882535534251	No Hit
GTTTTATACAGTTCCAACAATAAGAACTACTTAGCTTGGTATCAGCAGAA	4901	0.19424294199781303	No Hit
ATATTATACTACTCCTCGGACGTTCGGCCCAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCAT	3915	0.155164480294111	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	3854	0.15274684726781707	No Hit
GTATAATATTGCTGACAGTAATAGACTGCCACATCTTCAGCCTGCAGGCTGGTGATAGTGAGAGTGAAATCTGTC	3528	0.13982638224204946	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCC	3439	0.1362990160233583	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	3430	0.1359423160686592	No Hit
GTATAAAACACTCTGACTGGACTTGCAGTGGATGGCGGCCCTCTCGCCCAGAGACACAGCCAGGGAGTCTGGAGA	3306	0.13102778335947152	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	2814	0.11152818583592039	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	2751	0.10903128615302665	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	2705	0.10720815305123124	No Hit
ACTTAGGAGGCTGGCCTGGTTTCTGCTGATACCAAGCTAAGTAGTTCTTATTGTTGGAACTGTATAAAACACT	2666	0.1056624532475351	No Hit
CACTATCACCAGCCTGCAGGCTGAAGATGTGGCAGTCTATTACTGTCAGCAATATTATACTACTCCTCGGACGTT	2663	0.1055435532626354	No Hit
GTCTATTACTGTCAGCAATATTATACTACTCCTCGGACGTTCGGCCCAGGGACCAAGGTGGAAATCAAACGAA	2553	0.10118388714964632	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGGGGG	3250	46.195408	69
AGGGGGG	4620	45.976524	70
CTTATAC	3460	38.953228	1
CGTATGC	3275	37.235382	41
TCGCGTA	130	37.168076	38
TATACAC	3650	37.09977	3
TCGTATG	3235	36.691776	40
GCCGTCT	3215	36.67642	46
CTCGTAT	3150	36.313892	39
TGCCGTC	3345	35.87783	45
ATGCCGT	3415	35.748524	44
ATCTCGT	3285	35.69132	37
CCGTCTT	3350	35.53168	47
AATCTCG	3370	35.45881	36
CGAATCT	3430	35.15658	34
TAAGGCG	3875	34.89262	29
GCGAATC	3705	34.882496	33
TATGCCG	3525	34.68793	43
ATCGCGT	160	34.382988	37
GACTAAG	3925	34.170914	26