FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005579033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198918256
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGTAGGTTACAAGTAAG7462010.3751294702684303No Hit
CAGACGCGGCATAGCGATTGTGGA5114950.2571382890065153No Hit
CAGACGCGCACATACTGCTTGAAC4988040.2507582813314028No Hit
CAGACGCGCTTGCTTCTGTAATAG4822650.242443810687743No Hit
CAGACGCGCCGGTTCACTAGGATT4705250.2365418888450339No Hit
CAGACGCGAGCCTGTTGAGTGCGG4400080.22120041108745694No Hit
CAGACGCGGGAAGCAACTCATAAG3809920.19153194264884366No Hit
CAGACGCGGGCTTCATGAGAACCA2620840.13175462386921388No Hit
CAGACGCGAGCCAAATGACCTGCA2502450.12580293283890445No Hit
CAGACGCGCTATATCGATTAGTTC2294930.11537050676736277No Hit
CAGACGCGGTCCTGGCTTCGCTCC2282990.11477026020175844No Hit
CAGACGCGCGCGAAATGACCAGGG2202120.1107047711095959No Hit
CAGACGCGTCCCTGTTGTGCAAGG2137440.10745318418637251No Hit
CAGACGCGTCCAACTACAACTACG2082790.10470582448701943No Hit
CAGACGCGCCTTCAGGAAACCGAC2035930.1023500829406025No Hit
CAGACGCGCTTCTATTGGCTTCGA1994230.10025374443258742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)