FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005579034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169417828
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGTAGGTTACAAGTAAG6413580.37856582602392946No Hit
CAGACGCGGCATAGCGATTGTGGA4350940.25681712788809924No Hit
CAGACGCGCACATACTGCTTGAAC4312090.25452398079380406No Hit
CAGACGCGCTTGCTTCTGTAATAG4162440.24569078999171207No Hit
CAGACGCGCCGGTTCACTAGGATT4045380.23878124561955782No Hit
CAGACGCGAGCCTGTTGAGTGCGG3787340.22355026296288016No Hit
CAGACGCGGGAAGCAACTCATAAG3271230.19308652687956784No Hit
CAGACGCGGGCTTCATGAGAACCA2247150.13263952362793838No Hit
CAGACGCGAGCCAAATGACCTGCA2151460.12699135772180953No Hit
CAGACGCGCTATATCGATTAGTTC1967390.11612650352240379No Hit
CAGACGCGGTCCTGGCTTCGCTCC1945400.114828529143934No Hit
CAGACGCGCGCGAAATGACCAGGG1905470.1124716343311874No Hit
CAGACGCGTCCCTGTTGTGCAAGG1838500.10851868553054522No Hit
CAGACGCGTCCAACTACAACTACG1767740.10434202945867066No Hit
CAGACGCGCCTTCAGGAAACCGAC1746240.10307297765616497No Hit
CAGACGCGCTTCTATTGGCTTCGA1716890.10134057438158162No Hit
CAGACGCGCAAGGTCACCGTAAAT1703890.1005732407335549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)