FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005579035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68733085
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGTAGGTTACAAGTAAG2609680.379683234064061No Hit
CAGACGCGGCATAGCGATTGTGGA1779650.25892188601748345No Hit
CAGACGCGCACATACTGCTTGAAC1774790.2582148029584297No Hit
CAGACGCGCTTGCTTCTGTAATAG1700840.2474557922141862No Hit
CAGACGCGCCGGTTCACTAGGATT1658450.24128845664355092No Hit
CAGACGCGAGCCTGTTGAGTGCGG1529100.22246928098746038No Hit
CAGACGCGGGAAGCAACTCATAAG1143600.16638275438968003No Hit
CAGACGCGGGCTTCATGAGAACCA912360.13273956785149393No Hit
CAGACGCGAGCCAAATGACCTGCA852480.12402760621031343No Hit
CAGACGCGCTATATCGATTAGTTC806010.11726667004689226No Hit
CAGACGCGGTCCTGGCTTCGCTCC791340.11513232673900785No Hit
CAGACGCGCGCGAAATGACCAGGG773500.11253677904898347No Hit
CAGACGCGTCCCTGTTGTGCAAGG741580.10789272735248243No Hit
CAGACGCGTCCAACTACAACTACG727970.10591260380644926No Hit
CAGACGCGCCTTCAGGAAACCGAC720020.10475595559256505No Hit
CAGACGCGCTTCTATTGGCTTCGA701760.10209930195916567No Hit
CAGACGCGCAAGGTCACCGTAAAT699810.10181559579349596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)