FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005579057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences325709613
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACGGATCACCGATCG5713210.1754080865890808No Hit
CCCTGATTCCCTAAAG5317270.16325185956362914No Hit
CTTAATCTCCTTTGCG5030140.15443633835885587No Hit
TCAAGGTTCGTTCCGT4875370.14968455966327282No Hit
CCTTAATCAAACCCTA4838860.14856362252961813No Hit
GCACCTTCACGGTTAT4815490.1478461122361777No Hit
GATGGCCAGGTACTCT4690540.14400987299076126No Hit
ATAGGCTGTGCGCTCA4372030.13423091691186897No Hit
GGAGGATGTATGTTCG4370230.13417565296115472No Hit
GGGTGTCAGCACCATT4333670.13305318071775793No Hit
ATCGAGTTCGGTAGGA4323770.1327492289888294No Hit
ACAAACCTCCGTCAAA4207150.12916873902644072No Hit
GGGTCTGGTGCGTCCA4181010.12836618365328994No Hit
TGCTCGTTCCAGGTAT4174930.12817951430865504No Hit
TAACGGTTCGAACCGC3933140.12075603061798487No Hit
TAGCATGGTCCCGAGT3915850.12022518966917933No Hit
ACTACGATCTTTGCAT3914120.12017207487210395No Hit
CATTGGAAGAGACTCG3873140.11891389892750878No Hit
GGTACCGAGCCGCAAA3860680.11853134957978657No Hit
TCAAGACAGTCAACTC3849220.11817950242690564No Hit
GGGCCATGTTTCGATG3825940.11746475533100094No Hit
GCTTGCTTCTCCAACC3818080.11722343607954856No Hit
GCTTGCTGTACCTATG3804280.11679974579073907No Hit
GGCACGTGTACGGAGT3775640.11592043493048516No Hit
TTCATTGGTTGGCTAT3769280.11572516897129469No Hit
CAAAGCTAGCACGTAG3763310.11554187686809232No Hit
ACTTCCGCATGGTAAA3672010.11273876647908455No Hit
CACTGAACATTGAACC3500940.10748654200758882No Hit
TGCTCACAGATGCGAC3487430.10707175535528331No Hit
TTGTTCATCTGGAAGG3380090.1037761817610216No Hit
AGTTTGGCATGTGGGA3372940.10355666106790652No Hit
TTGCCCACAATTGCCA3348840.10281673817223196No Hit
TTTGAGGGTTTGCCAA3347690.10278143064816452No Hit
GAGTGAGGTGATTCCA3343460.10265156036398594No Hit
AGCCCGAAGCATTCCA3311260.1016629496900971No Hit
AAACGAATCACCCGGA3304200.10144619219451777No Hit
CACATGAGTCACAGTT3262010.10015086659416465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)