FastQCFastQC Report
Thu 12 May 2022
EGAF00005579061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences213941053
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTATGCATCAGAAA5264580.2460761937074321No Hit
TCCATCGTCCACTAGA4566310.2134377640928971No Hit
TACCTCGCAAGGAACC4264510.19933107462082092No Hit
TTGCGAACAAGGTTCT4218380.1971748732114542No Hit
GTGTCCTGTAGAACGC4181530.1954524361437073No Hit
AGGCCCAAGGCAGTAC3942300.18427038404826399No Hit
GTTATGGTCTGATCCC3935940.1839731059003435No Hit
GGAATCTAGTCAGCCC3877810.18125600232508907No Hit
GAAATGAAGTTAGCGG3466040.16200911192112344No Hit
CCATACCAGTACGCGA3293360.1539377297539991No Hit
AGACAAATCCATATCT3200790.1496108369626469No Hit
CAACGGCAGCTGGAGT3111500.14543725742997068No Hit
GCACGGTAGAAATCTG3066380.14332826528623283No Hit
AGATAGAGTCTGGTCG3037730.1419891113651759No Hit
CAGCCTTAGTATACGA3000040.14022741114581688No Hit
TCACTCGAGTGAAACT2845940.13302449249887538No Hit
ATGCATGAGACGAAAG2842160.13284780831662074No Hit
GGAATCTAGGGCTTCC2820530.1318367821626081No Hit
AACTGGTAGCCGCAAA2798400.13080238508501685No Hit
CCTCCCTCAGGGTAAC2693830.12591459012777695No Hit
AGCCTGGGTGGACAGT2687160.12560282200723769No Hit
TTACGGAAGACTCGGA2632400.12304323845690336No Hit
CACTGAATCTATCTAC2626360.12276091770007322No Hit
CTAGGGCGTTTCGATG2608300.12191675994041218No Hit
GCTCACTGTAGTCCAT2602130.12162836274345158No Hit
TTGCAGAAGTCGTGAG2571810.12021114993764194No Hit
TTGCTTAAGGAGTACC2569630.12010925271083901No Hit
CATGCCTAGTTCAGGG2541100.11877570781144095No Hit
CACCTGTAGCTCGGCT2532100.11835503118702514No Hit
GAGAACGTCGTGTGCG2519530.11776748616825776No Hit
TCTATTGCATGCCCTT2502900.1169901692500317No Hit
CACCTGTAGTAGGTCG2480420.11593941252593534No Hit
CACATGAGTCATAGCT2399000.11213369133038717No Hit
GGTCATAAGCGAGAAA2379410.11121801854457546No Hit
GCCTAGGTCCAGCACG2359900.11030608510653632No Hit
TGCCTGTAGTCGTGAG2349830.10983539470566223No Hit
TTGACGACAGGTGTGA2341660.109453513814387No Hit
CGGTGCATCGCAAGCC2330020.1089094387134759No Hit
TTGCCCAGTAGAATAC2326780.10875799512868622No Hit
TACCCTGGTATCCCTC2290720.10707248412019361No Hit
GTCACGGCAATGAAAC2287420.10691823602457448No Hit
GTCTACCGTACGAGAC2269160.10606472989548199No Hit
CTAGGATTCCGTACGG2268280.10602359706998357No Hit
GTGTCCTCAGAGAGAA2215120.10353880047510096No Hit
AATGCCATCGATAGGG2212720.10342662004192342No Hit
GACCTTCTCTGTTTAC2209430.10327283936477585No Hit
TAGCGGCCACTGCTCT2193330.10252029562554316No Hit
GTCACCTAGGCAGATC2191530.10243616030066001No Hit
TGGCCTTTCGCTCGGA2155840.10076794377561563No Hit
ACAAAGACAGGTGTCC2153620.10066417687492639No Hit
GTTACGACATCCCAAA2150640.1005248861703976No Hit
CCCTAACTCCTGAAAC2146380.10032576590150745No Hit
TGCATTTCAATCCATG2141600.1001023398720955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)