FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005579064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208141578
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTATGCATCAGAAA5109390.24547666300483223No Hit
TCCATCGTCCACTAGA4444200.21351812755066168No Hit
TTGCGAACAAGGTTCT4106770.19730656601440774No Hit
TACCTCGCAAGGAACC4016100.19295039648445445No Hit
GTTATGGTCTGATCCC3990360.19171373823254093No Hit
AGGCCCAAGGCAGTAC3866330.18575481348565542No Hit
GGAATCTAGTCAGCCC3815420.18330888218787308No Hit
GAAATGAAGTTAGCGG3367150.16177209918145236No Hit
CCATACCAGTACGCGA3190960.1533071878603707No Hit
AGACAAATCCATATCT3153630.15151369708554818No Hit
CAACGGCAGCTGGAGT3053570.1467063923191742No Hit
GCACGGTAGAAATCTG3007390.1444877101873418No Hit
AGATAGAGTCTGGTCG2972370.14280520156333207No Hit
CAGCCTTAGTATACGA2893220.13900250146080856No Hit
ATGCATGAGACGAAAG2770600.13311131906571785No Hit
GGAATCTAGGGCTTCC2755930.13240651034172518No Hit
TCACTCGAGTGAAACT2752900.13226093635169808No Hit
AACTGGTAGCCGCAAA2748800.13206395504506072No Hit
CCTCCCTCAGGGTAAC2645000.12707696489165657No Hit
AGCCTGGGTGGACAGT2613160.1255472368908436No Hit
CACTGAATCTATCTAC2583760.12413473678959039No Hit
TTACGGAAGACTCGGA2575130.12372011516122935No Hit
TTGCTTAAGGAGTACC2553360.12267419246720615No Hit
CTAGGGCGTTTCGATG2540760.12206883528095477No Hit
GCTCACTGTAGTCCAT2534370.12176183270792729No Hit
TTGCAGAAGTCGTGAG2517960.12097342703916657No Hit
CATGCCTAGTTCAGGG2481130.11920395837490959No Hit
CACCTGTAGCTCGGCT2476420.1189776700933823No Hit
GAGAACGTCGTGTGCG2462570.11831225763071711No Hit
TCTATTGCATGCCCTT2432770.11688053984101147No Hit
CACCTGTAGTAGGTCG2385570.1146128526036254No Hit
CACATGAGTCATAGCT2329680.1119276610846104No Hit
GGTCATAAGCGAGAAA2324540.11168071378799675No Hit
GTCACGGCAATGAAAC2314170.11118249521486764No Hit
TGCCTGTAGTCGTGAG2291100.11007411503337405No Hit
TTGCCCAGTAGAATAC2287790.10991508866143025No Hit
GCCTAGGTCCAGCACG2285170.10978921280206688No Hit
TTGACGACAGGTGTGA2258910.10852757155516521No Hit
GACCTTCTCTGTTTAC2251230.10815859193687866No Hit
GTCACCTAGGCAGATC2243890.10780594735377666No Hit
GTCTACCGTACGAGAC2233720.10731733762487379No Hit
CTAGGATTCCGTACGG2223290.1068162363984768No Hit
GATCATGGTGCTGTGC2213700.10635549231782994No Hit
ACAAAGACAGGTGTCC2204110.10589474823718306No Hit
GTGTCCTCAGAGAGAA2179370.1047061342064006No Hit
AATGCCATCGATAGGG2155640.10356604483896052No Hit
CCCTAACTCCTGAAAC2137650.10270172930081274No Hit
TAGCGGCCACTGCTCT2117670.10174180576261414No Hit
CTTCCAGAGCAGTAGC2113010.1015179196921434No Hit
GTTACGACATCCCAAA2108520.10130220113926493No Hit
TGGCCTTTCGCTCGGA2102580.10101681846574644No Hit
CAGCTGGAGGACTAGC2096340.10071702252588861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)