FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005579066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences265910617
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTATGCATCAGAAA6726870.252974855832853No Hit
TCCATCGTCCACTAGA5854480.2201672150608413No Hit
GTGTCCTGTAGAACGC5481700.20614821859482202No Hit
TACCTCGCAAGGAACC5343430.20094835100172023No Hit
TTGCGAACAAGGTTCT5299730.1993049416300666No Hit
GTTATGGTCTGATCCC5144000.1934484624207389No Hit
AGGCCCAAGGCAGTAC5010330.1884215852878112No Hit
GAAATGAAGTTAGCGG4442620.167071930038807No Hit
CCATACCAGTACGCGA4194400.15773721438132723No Hit
AGACAAATCCATATCT4106100.1544165496784207No Hit
CAACGGCAGCTGGAGT3990510.1500696002672206No Hit
GCACGGTAGAAATCTG3954030.14869771070479673No Hit
CAGCCTTAGTATACGA3815290.14348016799945976No Hit
ATGCATGAGACGAAAG3657790.13755712506958684No Hit
TCACTCGAGTGAAACT3629930.1365094045868804No Hit
AACTGGTAGCCGCAAA3596830.13526462540606268No Hit
GGAATCTAGGGCTTCC3559770.13387092400300812No Hit
AGCCTGGGTGGACAGT3444420.12953300018103453No Hit
CACTGAATCTATCTAC3397480.1277677453548235No Hit
GCTCACTGTAGTCCAT3350380.12599647346912818No Hit
CTAGGGCGTTTCGATG3330970.12526652894043716No Hit
TTGCAGAAGTCGTGAG3297820.12401986942853055No Hit
TTACGGAAGACTCGGA3277670.1232620959997246No Hit
TTGCTTAAGGAGTACC3271490.12302968707714292No Hit
GAGAACGTCGTGTGCG3237820.1217634721219123No Hit
TCTATTGCATGCCCTT3212480.12081052032608386No Hit
CATGCCTAGTTCAGGG3154340.11862407133597075No Hit
CACATGAGTCATAGCT3073120.11556966151524518No Hit
TGCCTGTAGTCGTGAG3050870.11473291418070758No Hit
GGTCATAAGCGAGAAA3043610.11445989010660676No Hit
AGATAGAGTCTGGTCG3029840.11394204692473787No Hit
GCCTAGGTCCAGCACG3024010.11372280031977813No Hit
TTGACGACAGGTGTGA2996760.11269801987635567No Hit
TTGCCCAGTAGAATAC2970250.11170106833304817No Hit
CTAGGATTCCGTACGG2914530.10960562736763535No Hit
TACCCTGGTATCCCTC2910920.10946986746302048No Hit
GTCACGGCAATGAAAC2871240.10797763671091026No Hit
GTGTCCTCAGAGAGAA2854530.10734923006101707No Hit
CACCTGTAGTAGGTCG2850240.10718789765359388No Hit
GTCTACCGTACGAGAC2803100.10541512150302745No Hit
AATGCCATCGATAGGG2802460.1053910532650902No Hit
CGGTGCATCGCAAGCC2785740.10476227054897924No Hit
CCTCCCTCAGGGTAAC2777040.1044350929395196No Hit
GTTACGACATCCCAAA2774220.10432904226610855No Hit
CCCTAACTCCTGAAAC2771170.10421434206968878No Hit
TGCATTTCAATCCATG2732520.10276084613800884No Hit
GACCAATGTGGTACTT2729120.10263298362396715No Hit
TAGCGGCCACTGCTCT2728330.10260327439276333No Hit
CTTCCAGAGCAGTAGC2727220.1025615310425909No Hit
TAGGAGGAGGAGTCTG2724190.10244758297860669No Hit
TGAATCGAGGTAGGAA2686600.10103395006601033No Hit
CAGCTGGAGGACTAGC2681470.10084102809629447No Hit
GATCATGGTGCTGTGC2667010.10029723634539947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)