FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005579067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116069816
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGTCCTCACCACAA4839130.41691545371278954No Hit
GCAACCGCATTACCTT2774510.2390380286292519No Hit
CGCACAGAGATTACGA2490140.2145381190231231No Hit
GAAGTGGAGAGCTACG2241490.19311566755649892No Hit
CAGGGCTAGCTTCAAC2195510.1891542586747962No Hit
CTAGCGGAGTTACACC2125300.1831053130987991No Hit
ACAAAGACAAGTAACA2110630.18184141861653336No Hit
TTAGCGATCCTAGAGT2054130.1769736586814267No Hit
TCACCACTCGCTCGGA2041160.17585622777242965No Hit
CTCAGCTGTCAATACC1997330.1720800522333903No Hit
CTGAATGAGAGCAGCT1995010.17188017253340007No Hit
CCTTGGTAGGAACCGT1983360.17087646628129402No Hit
TCAGTCCGTAGGTAAT1922960.16567270167810036No Hit
TGAATCGTCCATCATT1882020.16214551421361778No Hit
TGTACGAGTTACCCAA1866820.16083595755850943No Hit
CGCAATACATTGTGAC1828010.15749228033582824No Hit
ATATTCCAGAACAGGA1810790.15600869049365945No Hit
CACGTTCTCGGATAAA1791150.15431660544719053No Hit
TTAGCTTGTGCTTCCT1769880.15248408768046984No Hit
AGGCCTGTCCAATCCC1753740.15109354528484822No Hit
CCAATGATCTTATCAC1729880.14903788595650053No Hit
TCACAGAAGGATTAAC1713890.14766026681734382No Hit
GCGATTACAAGGCTTT1707980.14715109051262734No Hit
TTTGCGCAGCTGCTCG1699100.14638603372990616No Hit
AAGGTTCAGGCTCAGA1651900.14231951569562235No Hit
TGGCCTTAGTCTTAGC1651650.14229797693484755No Hit
GACTAGTAGATTACGA1605240.13829952138461218No Hit
GACCCAGAGACCCATT1585330.13658417447650645No Hit
CACTAAGGTTTCGTTT1568880.1351669240175241No Hit
TTCGTTACAGGCATTT1560090.1344096211886818No Hit
GAACTTGAGCGCAATG1513470.1303930730793956No Hit
TTAGGTGGTTCCCTTG1498220.1290792086721323No Hit
GCGATTAAGATGGGAA1494770.12878197377343995No Hit
AAACGAATCGTCGCAG1456150.12545466600894759No Hit
GAAATGATCGTGGCGT1455060.12536075701196941No Hit
ACAGACTTCTCCTTGG1447930.12474647155467189No Hit
GAACTTGTCACATTCT1430130.12321291178750554No Hit
TCAAGGTGTGGTAGAC1415810.12197917157032453No Hit
TACTCGCAGGGTCTGA1407870.12129510052811662No Hit
TCGCCTAAGCAGAATT1405950.12112968284536611No Hit
TTAGCGACACATAAAG1405390.12108143602123052No Hit
GAGGTCCCAGCAGGTA1400820.12068770747426705No Hit
GATCGTATCCGGCTGA1390350.11978566417301807No Hit
ATTCGTTTCCCACTTG1374350.11840718348343035No Hit
CGATGATTCATCGCCT1355790.11680814588350859No Hit
AGCTGATAGTGATAAC1341470.11557440566632758No Hit
GAGCATTAGGTTGTTC1337530.1152349547965166No Hit
AATGGCTGTATTGTGC1335860.1150910758745409No Hit
TGAATCGTCATCGCCT1322360.11392798279270125No Hit
TAACGGTTCAGCACGC1306090.11252624024147673No Hit
TCAGTCCTCGTGAGTT1294890.11156130375876534No Hit
AACCTTTAGCGTATCT1272950.10967106211316816No Hit
CAAAGCTGTACGGTTT1258960.1084657530602099No Hit
AAAGGATGTATACGCT1250980.10777823581627803No Hit
CGTACAAAGGGAAGCG1249690.10766709581068001No Hit
TGGAAGGAGAGAGGTA1242750.10706917981157134No Hit
CTCACCAAGAGGCCTA1241110.1069278855408886No Hit
TAAGTGCAGAACTAAC1239290.10677108336244799No Hit
GCTTGCTCAAGCGACA1234600.1063670162103126No Hit
ACTGCAAGTCTCTGGG1232530.10618867527109718No Hit
GCGGTGTGTCCACCAG1225090.1055476817504389No Hit
GAGGCTCAGACGAAAG1221100.10520392312847295No Hit
TTACCCGTCGCAGATT1218290.10496182745736411No Hit
GGAGGATGTAGCGTTT1215080.10468526976901557No Hit
ATGTTTCCAGGTAGGT1207640.10404427624835727No Hit
GTCACCTCATCACAAC1201000.10347220676217837No Hit
TGTACAGAGAAGAGTG1199830.10337140536175228No Hit
GAAGAGCTCGGCAATT1183340.10195070870104594No Hit
TACTCGCTCGGGCTCA1183180.10193692389415004No Hit
CTCTCGATCCGGCGAT1181630.10180338357734624No Hit
TGGTCCTGTACGGATG1177800.10147340976227619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)