FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005579072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93710134
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGTCCTCACCACAA3897440.41590379115240617No Hit
GCAACCGCATTACCTT2245530.23962509753747657No Hit
TCCCACATCTGAGTAC2036950.21736709927231562No Hit
CAGGGCTAGCTTCAAC1782260.19018860863009757No Hit
GAAGTGGAGAGCTACG1766390.1884950884821059No Hit
TTAGCGATCCTAGAGT1751020.1868549243564202No Hit
CTAGCGGAGTTACACC1741150.1858016764761002No Hit
CGCACAGAGATTACGA1698120.18120985719644794No Hit
ACAAAGACAAGTAACA1691100.18046073864327203No Hit
CTCAGCTGTCAATACC1652070.17629576754206755No Hit
TCACCACTCGCTCGGA1626400.1735564693568787No Hit
CTGAATGAGAGCAGCT1596490.17036471210253526No Hit
CCTTGGTAGGAACCGT1592300.16991758863561118No Hit
TCAGTCCGTAGGTAAT1555110.16594896769649267No Hit
CGCAATACATTGTGAC1533770.16367173266447363No Hit
TGAATCGTCCATCATT1521630.16237624844288454No Hit
TGTACGAGTTACCCAA1502110.16029322933205922No Hit
CCAATGATCTTATCAC1452700.15502058720778267No Hit
CACGTTCTCGGATAAA1446780.15438885190367993No Hit
ATATTCCAGAACAGGA1446560.1543653752538653No Hit
TGGCCTTAGTCTTAGC1429450.1525395321705548No Hit
TTAGCTTGTGCTTCCT1421870.15173065487239618No Hit
TCACAGAAGGATTAAC1402880.14970419314521521No Hit
AGGCCTGTCCAATCCC1390370.1483692254671197No Hit
GCGATTACAAGGCTTT1373970.1466191479354837No Hit
TTTGCGCAGCTGCTCG1347320.1437752719465752No Hit
AAGGTTCAGGCTCAGA1298200.13853357631523608No Hit
GACTAGTAGATTACGA1288290.13747605995313164No Hit
GACCCAGAGACCCATT1281480.13674935092932425No Hit
CACTAAGGTTTCGTTT1265160.1350078103612572No Hit
TTCGTTACAGGCATTT1242450.13258437982811977No Hit
GCGATTAAGATGGGAA1218400.13001795515520234No Hit
GAACTTGAGCGCAATG1211540.12928591052916433No Hit
TTAGGTGGTTCCCTTG1202520.12832336788676452No Hit
ACAGACTTCTCCTTGG1175690.12546028372982584No Hit
AAACGAATCGTCGCAG1165240.12434514286363094No Hit
TCAAGGTGTGGTAGAC1162100.12401006704354943No Hit
GAAATGATCGTGGCGT1159370.12371874316175879No Hit
GAACTTGTCACATTCT1156220.12338260022123114No Hit
GAGCATTAGGTTGTTC1153680.12311155162791679No Hit
TTAGCGACACATAAAG1138970.12154181745167499No Hit
GATCGTATCCGGCTGA1137250.12135827273494242No Hit
AATGGCTGTATTGTGC1128190.12039146161075813No Hit
TACTCGCAGGGTCTGA1123910.11993473405981897No Hit
GAGGTCCCAGCAGGTA1120290.11954843645832369No Hit
TTGCCCATCTGAGTCA1114890.11897219141741916No Hit
TCGCCTAAGCAGAATT1113930.11886974785459169No Hit
AGCTGATAGTGATAAC1108670.11830844249993283No Hit
ATTCGTTTCCCACTTG1087260.11602373762479093No Hit
CGATGATTCATCGCCT1082220.11548590891994669No Hit
TGAATCGTCATCGCCT1075430.11476133413703155No Hit
TCAGTCCTCGTGAGTT1053200.11238912538530785No Hit
AACCTTTAGCGTATCT1036360.11059209455404258No Hit
CAAAGCTGTACGGTTT1018930.10873210361645624No Hit
GCTTGCTCAAGCGACA1007300.10749104253761925No Hit
AAAGGATGTATACGCT1004190.10715916807887609No Hit
CGTACAAAGGGAAGCG997770.10647407675246734No Hit
CTCACCAAGAGGCCTA997320.10642605633239197No Hit
GCGGTGTGTCCACCAG995920.10627665946993524No Hit
TGGAAGGAGAGAGGTA993760.10604616145357341No Hit
ACCCAAACATGATTGC986490.10527036488924453No Hit
GAGGCTCAGACGAAAG985490.10516365284463258No Hit
ACTGCAAGTCTCTGGG984660.10507508184760465No Hit
TTACCCGTCGCAGATT980820.10466530759629475No Hit
TAAGTGCAGAACTAAC977390.10429928528327577No Hit
GGAGGATGTAGCGTTT976660.10422138549070904No Hit
GTCACCTCATCACAAC973410.1038745713457202No Hit
TGTACAGAGAAGAGTG970850.1036013885115136No Hit
CTCTCGATCCGGCGAT957480.1021746484750518No Hit
ATGTTTCCAGGTAGGT956880.10211062124828463No Hit
TACTCGCTCGGGCTCA945720.10091971483041524No Hit
TGGTCCTGTACGGATG940370.10034880539174129No Hit
GAAGAGCTCGGCAATT937320.10002333365567485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)