FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005579077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences266986618
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTATGCATCAGAAA6717800.25161560719121884No Hit
TCCATCGTCCACTAGA5842230.21882107963927988No Hit
TTGCGAACAAGGTTCT5375350.2013340608704216No Hit
GTTATGGTCTGATCCC5217130.19540792115655775No Hit
TACCTCGCAAGGAACC5153890.19303926311392883No Hit
GTGTCCTGTAGAACGC4849070.18162221149226287No Hit
GAAATGAAGTTAGCGG4431550.16598397452264815No Hit
CCATACCAGTACGCGA4174530.15635727480543612No Hit
AGACAAATCCATATCT4087150.1530844515959972No Hit
CAACGGCAGCTGGAGT3943120.14768979919435513No Hit
GCACGGTAGAAATCTG3913160.1465676455739066No Hit
AGATAGAGTCTGGTCG3834860.14363491431619244No Hit
CAGCCTTAGTATACGA3801430.1423827916348976No Hit
ATGCATGAGACGAAAG3630820.1359925837181847No Hit
GGAATCTAGGGCTTCC3603830.1349816716282012No Hit
TCACTCGAGTGAAACT3589650.13445055886658708No Hit
AACTGGTAGCCGCAAA3568020.13364040590229134No Hit
GGAATCTAGTCAGCCC3529720.13220587707508247No Hit
CCTCCCTCAGGGTAAC3492670.1308181670738269No Hit
CACTGAATCTATCTAC3395090.12716330224460914No Hit
TTACGGAAGACTCGGA3372870.1263310507944634No Hit
CTAGGGCGTTTCGATG3326330.12458789226657047No Hit
GCTCACTGTAGTCCAT3312170.12405752860617156No Hit
AGCCTGGGTGGACAGT3308710.12392793409593285No Hit
TTGCTTAAGGAGTACC3288810.12318257838675646No Hit
TTGCAGAAGTCGTGAG3275470.12268292787618292No Hit
CACCTGTAGCTCGGCT3233890.12112554644967263No Hit
CATGCCTAGTTCAGGG3231710.12104389441721009No Hit
TCTATTGCATGCCCTT3219930.12060267380142625No Hit
GAGAACGTCGTGTGCG3212390.120320262643276No Hit
CACCTGTAGTAGGTCG3149630.11796958302981311No Hit
CACATGAGTCATAGCT3049450.11421733504261251No Hit
GGTCATAAGCGAGAAA3044210.11402107052421631No Hit
TGCCTGTAGTCGTGAG3023530.11324649986764505No Hit
TTGCCCAGTAGAATAC2989430.11196928229563925No Hit
GCCTAGGTCCAGCACG2982900.11172470074885925No Hit
TTGACGACAGGTGTGA2968500.11118534787387734No Hit
GTCACGGCAATGAAAC2953410.1106201510069692No Hit
GACCTTCTCTGTTTAC2902800.10872455038177231No Hit
CTAGGATTCCGTACGG2892750.10834812702110787No Hit
GCACCTTAGGTTGTTC2864840.10730275627522275No Hit
TACCCTGGTATCCCTC2859590.10710611720621893No Hit
GTCTACCGTACGAGAC2859230.10709263338434438No Hit
GTGTCCTCAGAGAGAA2846480.1066150813596208No Hit
ACAAAGACAGGTGTCC2840740.1064000893108433No Hit
AATGCCATCGATAGGG2820770.1056521117474135No Hit
TAGCGGCCACTGCTCT2805790.10509103493718924No Hit
CCCTAACTCCTGAAAC2777380.10402693666092283No Hit
TGGCCTTTCGCTCGGA2761370.10342728113811309No Hit
GTTACGACATCCCAAA2750940.1030366248543588No Hit
TGCATTTCAATCCATG2734250.10241149989023046No Hit
TAGGAGGAGGAGTCTG2716050.10172981778435052No Hit
GACCAATGTGGTACTT2701150.10117173737898728No Hit
TGAATCGAGGTAGGAA2683320.10050391364558953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)