FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005579079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005579079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127630930
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGTCCTCACCACAA5311610.4161694974721253No Hit
GCAACCGCATTACCTT3032720.23761638342680727No Hit
TCCCACATCTGAGTAC2758600.21613883092444752No Hit
CGCACAGAGATTACGA2645260.20725853834959912No Hit
GAAGTGGAGAGCTACG2425210.19001741975867448No Hit
CAGGGCTAGCTTCAAC2404370.1883845867142079No Hit
TTAGCGATCCTAGAGT2381040.18655665989427483No Hit
CTAGCGGAGTTACACC2380580.18652061847390755No Hit
ACAAAGACAAGTAACA2286110.17911880764325702No Hit
TCACCACTCGCTCGGA2196760.17211815349147733No Hit
CCTTGGTAGGAACCGT2187120.1713628506820408No Hit
CTCAGCTGTCAATACC2160340.16926461320935293No Hit
CTGAATGAGAGCAGCT2154240.16878667263491695No Hit
TCAGTCCGTAGGTAAT2099450.16449382606551563No Hit
TGAATCGTCCATCATT2058720.16130259334473235No Hit
CGCAATACATTGTGAC2049620.16058960002877046No Hit
TGTACGAGTTACCCAA2043970.16014691736556333No Hit
ATATTCCAGAACAGGA1981060.15521786137576526No Hit
CCAATGATCTTATCAC1972430.1545416929893091No Hit
CACGTTCTCGGATAAA1967760.1541757942216671No Hit
TTAGCTTGTGCTTCCT1945450.15242778533385287No Hit
TGGCCTTAGTCTTAGC1914270.14998480384026036No Hit
TCACAGAAGGATTAAC1898040.14871316850860525No Hit
GCGATTACAAGGCTTT1861620.14585962822648085No Hit
TTTGCGCAGCTGCTCG1831730.14351771941174446No Hit
AAGGTTCAGGCTCAGA1780410.1394967505133748No Hit
GACTAGTAGATTACGA1747010.1368798299910531No Hit
AGGCCTGTCCAATCCC1746240.13681949978739477No Hit
CACTAAGGTTTCGTTT1707380.133774783275496No Hit
TTCGTTACAGGCATTT1694520.13276719052348832No Hit
GACCCAGAGACCCATT1688760.1323158892597586No Hit
GAACTTGAGCGCAATG1649240.1292194611447241No Hit
GCGATTAAGATGGGAA1644070.12881438692016112No Hit
TTAGGTGGTTCCCTTG1638750.12839756005852188No Hit
AAACGAATCGTCGCAG1593630.12486236682597235No Hit
GAAATGATCGTGGCGT1590650.12462888110272329No Hit
ACAGACTTCTCCTTGG1585310.12421048722280721No Hit
TCAAGGTGTGGTAGAC1568710.12290986205303056No Hit
GAACTTGTCACATTCT1566950.12277196444466869No Hit
TACTCGCAGGGTCTGA1543590.12094168709732038No Hit
TTAGCGACACATAAAG1542020.1208186761625885No Hit
GATCGTATCCGGCTGA1539180.1205961595672773No Hit
GAGCATTAGGTTGTTC1518080.11894295528521182No Hit
TTGCCCATCTGAGTCA1513220.11856216984393987No Hit
TCGCCTAAGCAGAATT1503670.11781391861674909No Hit
AATGGCTGTATTGTGC1492490.11693795539999591No Hit
ATTCGTTTCCCACTTG1491100.11682904762975559No Hit
AGCTGATAGTGATAAC1489700.11671935635037683No Hit
CGATGATTCATCGCCT1486640.11647960255402041No Hit
TGAATCGTCATCGCCT1452470.11380235182804042No Hit
TCAGTCCTCGTGAGTT1426760.11178794983316348No Hit
AACCTTTAGCGTATCT1408470.11035491161899393No Hit
AAAGGATGTATACGCT1376600.10785786799485046No Hit
CAAAGCTGTACGGTTT1375760.10779205322722321No Hit
ACTGCAAGTCTCTGGG1360680.10661052144648638No Hit
TAAGTGCAGAACTAAC1359600.10652590245953705No Hit
CGTACAAAGGGAAGCG1359590.10652511895039862No Hit
GCTTGCTCAAGCGACA1357260.10634256132114683No Hit
CTCACCAAGAGGCCTA1349320.10572045506524162No Hit
GCGGTGTGTCCACCAG1346750.10551909321666778No Hit
TGGAAGGAGAGAGGTA1346030.10546268055870156No Hit
GAGGCTCAGACGAAAG1343070.10523076185372934No Hit
GGAGGATGTAGCGTTT1338870.10490168801559309No Hit
GTCACCTCATCACAAC1333920.10451385099207536No Hit
TTACCCGTCGCAGATT1329540.10417067398944754No Hit
ATGTTTCCAGGTAGGT1316840.10317561738365456No Hit
GAGGTCCCAGCAGGTA1311870.10278621334186No Hit
TGTACAGAGAAGAGTG1308620.10253157287187362No Hit
ACCCAAACATGATTGC1296480.10158039277783214No Hit
CTCTCGATCCGGCGAT1289160.10100686408850897No Hit
GTGCACGCATTAACGC1287210.10085407980651713No Hit
TGGTCCTGTACGGATG1287210.10085407980651713No Hit
TACTCGCTCGGGCTCA1284940.10067622323209585No Hit
GAAGAGCTCGGCAATT1282670.10049836665767459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)