FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005686568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005686568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18625578
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA15000.07.58958646-47
GCCGTAT18350.06.462521646-47
GATCGGA39950.06.1744551
ATCGGAA43450.05.78610752
CGTATCA22150.05.46090448-49
GAGCGTC45900.05.27054559
CCGTATC24100.05.11745948-49
Produced by FastQC (version 0.11.5)