FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005686569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005686569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18344445
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG18400.06.324570748-49
TCGTATG19150.06.201151444-45
CTCGTAT17800.06.13774744-45
GATCGGA34250.05.96946431
CGTATGC19650.05.801532746-47
ATCGGAA40000.05.23019462
Produced by FastQC (version 0.11.5)