FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005686611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005686611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32141123
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG34900.011.08548348-49
TCGTATG36150.010.50503244-45
CGTATGC35950.09.96935646-47
GATCGGA76600.09.7385921
CTCGTAT37600.09.59492144-45
ATCGGAA82250.09.1246012
AGATCGG87000.07.66741194-95
GTCACGA50200.07.564725428-29
TCGGAAG108850.07.369963
TCTCGTA50350.07.212262642-43
CGAACAG59950.06.96787532-33
TAGATCG33650.06.843028594-95
ACGAACA61150.06.753512432-33
CACGAAC66450.06.35772730-31
CGGAAGA131100.06.30018664
ATGCCGT66050.06.28865348-49
TCACGAA65450.06.20102330-31
ATCTCGT61600.05.972148442-43
AGTCACG69950.05.971752628-29
CGTCTGA70500.05.521176316-17
Produced by FastQC (version 0.11.5)