FastQCFastQC Report
Tue 4 Apr 2023
EGAF00005686956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005686956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102015768
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT3798100.3723051910955569TruSeq Adapter, Index 19 (97% over 38bp)
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA1478510.14492955637995097No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCGCGTAT1315950.1289947648092989TruSeq Adapter, Index 19 (97% over 38bp)
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT1180360.11570368219940275No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT1078510.10571993145216531No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1057070.10361829555603601No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)