FastQCFastQC Report
Tue 4 Apr 2023
EGAF00005686986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005686986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109691845
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA1814190.16538968781134095No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT1649670.15039130757623778TruSeq Adapter, Index 19 (97% over 38bp)
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTA1324400.12073823719529923No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)