FastQCFastQC Report
Tue 4 Apr 2023
EGAF00005687004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005687004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89262939
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGCGATAGGGTGGCCTGGGCTTGGGCAGGCTGGAGGCTGCCTCCCTA1356730.15199253074111754No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTAT1215470.13616737400949794TruSeq Adapter, Index 3 (97% over 36bp)
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA1024510.11477439702047006No Hit
CTCTGGTCTGCGGTTTGCGCTGCCCTCCTCCTCTTTCTTCTCCTCGGGGT1021310.11441590557532506No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA945360.10590733518196169No Hit
GCCCAGTGGATAGGATGGAGGAAGGGAAACTTCTAGAAAGCTGCCTGTGT904080.10128279553959119No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)