FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005687472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005687472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3914515
Sequences flagged as poor quality0
Sequence length32-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCCGT4650.00306812357.45087429
CGTCGGC5350.00151519877.125777733
CCCTATA6800.00275006246.114099519
CTCCTAC16506.941345E-55.602438470