FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005687691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005687691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12901489
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCGT5900.00429708046.45364439
ATACGCC9254.3301878E-45.61335215
TGTCGTG14050.00149915885.477252570
GCCGGTA13403.047724E-65.43156235
CGCGAAG8400.0048510475.35714536
CGTCGGC10604.7416714E-45.22500725
CGAAGAC13950.0081958495.122478570
Produced by FastQC (version 0.11.5)