FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005687698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005687698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8894216
Sequences flagged as poor quality0
Sequence length35-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACTC4650.00433106259.54892170
AGTACGC7101.1143255E-57.31670425
GTACGCA7108.7706794E-56.828923726
CGGTACA8703.7449936E-66.772353637
ACGCACG8056.4326305E-56.45324228
TACGCAC7802.978613E-46.216071627
GCCGGTA8458.262303E-45.740688335
CGCACGG9304.626569E-45.585839329
CCGGTAC8700.00119537275.576196736
ACTGCGA9150.00215513035.3216949
GCGAATG9250.0024328995.27052852
Produced by FastQC (version 0.11.5)