FastQCFastQC Report
Wed 1 Jun 2022
EGAF00005688253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32772421
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGAGGCCATCTCGTATG992500.3028461034355686TruSeq Adapter, Index 1 (97% over 37bp)
CTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTG350840.10705342763660944No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG338190.10319347478173799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)