FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8665416
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTTA209850.014.47468145
CGTTAAA17750.013.886234145
CGTATGC69500.013.455779145
GCGTTAA189900.013.437598145
CTCGTAT88700.013.403684145
TCTCGTA96500.013.146637145
CAGCGTT249450.013.135871145
ATCTCGT106850.013.094434145
TCGTATG78000.012.825917145
GTTAATC156950.012.702093145
CGTTAAT172800.011.99848145
TATGCCG57300.011.639575145
ACCAGCG315950.011.426544145
CCAGCGT309650.011.214202145
AGTCACC470500.010.877997145
TAATCTC163400.010.64788145
TTAATCT181550.010.182345145
GTCACCA467500.09.831314145
AATCTCG167550.09.82167145
TCCAGTC595150.09.720317145
Produced by FastQC (version 0.11.5)