FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7784973
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG16600.024.894215145
GCCGTAT59250.014.193886145
CGCCGTA59700.013.844019145
CGCACTA3300.00884750213.1815418
CGTATCA51200.012.743955145
CCGTATC57000.011.955966145
TGGTCGC99800.011.114567145
GATCTCG221750.010.723631145
TCTCGGT181450.010.468295145
GTGGTCG111050.010.053883145
TCGCCGT85200.010.040933145
GTGTAGA319050.09.748329145
GTCGCCG92900.09.520851145
TCGGTGG179350.09.499443145
TAGATCT263950.09.476088145
AGTGTAG330400.09.325682145
AGATCTC258250.09.264144145
CTCGGTG206250.09.174411145
AGAGTGT392450.09.088923145
GAGTGTA345600.08.831613145
Produced by FastQC (version 0.11.5)