FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9669821
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC53650.016.891018145
GCTCGGT204050.015.383912145
TCGGTAA151000.015.363442145
ATCTCGT83550.015.011191145
CTCGGTA174300.014.973408145
ACGCTCG236350.014.263065145
TCTCGTA74500.014.207318145
CGCTCGG229750.014.010156145
CGGTAAA15450.013.60771145
CACGCTC287150.013.557543145
CGGTAAT130300.013.297469145
AGTCACG370050.012.655743145
TCACGCT313050.012.597975145
CTCGTAT67800.012.510413145
TCGTATG59650.012.396676145
GGTAATC146450.011.831071145
GTCACGC382350.011.774596145
TATGCCG40950.011.330305145
GTATGCC69300.010.879668145
CCAGTCA529500.010.734098145
Produced by FastQC (version 0.11.5)