FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6329510
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG44650.014.93765145
TCTCGTA54950.013.720866145
CTCGTAT51150.013.039414145
GTCACGG232000.013.030586145
CGGAGAA178350.012.600985145
TATGCCG32350.012.325494145
TCACGGA216400.011.9933815145
ATCTCGT61750.011.9751145
AGTCACG253900.011.906641145
ACGGAGA190150.011.857141145
CACGGAG213000.011.674289145
CGTATGC40400.011.305118145
GTATGCC53100.010.512648145
AACAATC119750.010.291752145
CAGTCAC343600.09.621163145
ACAATCT132100.09.549098145
GAACTCC505450.09.365929145
TCTGAAC581500.09.200736145
TCCAGTC372650.09.065687145
CCAGTCA353650.08.917262145
Produced by FastQC (version 0.11.5)