FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6312326
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG29600.015.675674145
TCGTATG43550.014.982777145
CTCGTAT49800.014.703813145
ATCTCGT61500.013.910567145
TCTCGTA55600.012.90917145
CGTATGC38600.012.772019145
ACCGAAC158000.012.756328145
CCGAACT145200.012.482781145
GTATGCC49650.012.411881145
CACCGAA178600.012.340425145
CGAACTT134200.011.939268145
TCACCGA207250.011.544028145
CTTAATC101950.011.307012145
TAATCTC102700.010.306718145
GTCACCG249000.09.986947145
ACTTAAT134150.09.890047145
GAACTTA150250.09.843593145
TTAATCT115450.09.733649145
AACTTAA161350.09.525874145
AGTCACC270800.09.343611145
Produced by FastQC (version 0.11.5)