FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7710755
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC46800.013.167436145
TCGTATG53100.012.970514145
CTCGTAT60300.012.86455145
ATCTCGT69450.012.631102145
TCTCGTA64850.011.961949145
GTATGCC60750.010.740498145
GTAATCT126700.010.64301145
AGTCACA353450.010.378884145
CCAGTCA395900.010.016822145
TATGCCG37100.09.966081145
TCCTGTA203750.09.9273815145
ACATCCT262950.09.760189145
TAATCTC120650.09.7345495145
GTCACAT296050.09.624001145
TCCAGTC421100.09.38295145
CTCCAGT483250.09.241384145
TCACATC312450.09.142055145
GAACTCC569000.09.135557145
CACATCC303100.09.113122145
TCTGAAC658750.09.112506145
Produced by FastQC (version 0.11.5)