FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6699577
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG12750.018.764294145
CGCCGTA36300.017.974812145
CGTATCA32000.013.140337145
GTGGTCG77750.012.867885145
CGGTGGT107850.012.83931145
TGGTCGC67800.012.831576145
CCGTATC36200.011.615767145
TCTCGGT136700.011.296387145
GATCTCG172050.011.29298145
AGATCTC200400.011.287177145
GCCGTAT35050.011.169512145
GGTCGCC77350.010.77869145
GTGTAGA256550.010.399304145
TCGCCGT53050.010.386199145
GTCGCCG61400.010.272574145
GAGTGTA283050.010.168474145
TAGATCT209250.010.151509145
TCGGTGG133850.010.020325145
AGTGTAG266050.09.946219145
GTAGATC270450.09.409111145
Produced by FastQC (version 0.11.5)