FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10773837
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGAATC89800.016.388634145
ACGCTAA177450.015.770098145
TAACGAA121750.014.648368145
CGCTAAC155150.014.392029145
CACGCTA205900.014.224864145
TATGCCG35450.014.11094145
CTAACGA129400.013.558268145
GCTAACG143200.013.517343145
CTCGTAT57100.012.950519145
TCACGCT241100.012.899806145
CGAATCT92950.012.869381145
AGTCACG283750.012.1361475145
GTCACGC300850.012.0487795145
AACGAAT106300.011.048538145
TCGTATG49100.010.926305145
CGTATGC43250.010.895579145
CGTCTGA781350.010.503254145
CCAGTCA432700.010.404657145
ACGTCTG848950.010.315919145
TGAACTC679000.010.100536145
Produced by FastQC (version 0.11.5)