FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57448309
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT452050.013.920943145
TCGTATG413350.013.505424145
TATGCCG319500.013.138419145
ACACGAC1319350.012.743131145
TCTCGTA519300.012.523033145
CGACCAA128100.012.507731145
ATCTCGT611650.012.469475145
CACGACC1282800.012.394102145
CGTATGC384100.012.325493145
CACACGA1513600.012.1806555145
ACGACCA1139550.012.126205145
CGACCAT899050.011.604125145
ACACACG1779300.011.241854145
CATCTCG776800.010.341082145
ATGCCGT381950.010.325897145
GTCACAC2390450.010.078273145
AGTCACA2748450.09.596442145
CCAGTCA3154850.09.277168145
TCCAGTC3398850.09.244689145
CAGTCAC2983950.09.213237145
Produced by FastQC (version 0.11.5)