FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7849284
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG54100.014.740716145
TCTCGTA88050.014.079587145
TCGTATG74300.013.172498145
CGTATGC65600.012.709169145
CATCTCG122700.010.694418145
ATCTCGT96450.010.673559145
CTCGTAT80800.010.318336145
CTGTAGC258650.010.2867155145
TGTAGCC237400.010.260811145
TAGCCAT182100.09.873359145
GTATGCC77250.09.760184145
GTCACCT381700.09.724583145
CCTGTAG308500.09.447003145
AGTCACC407700.09.335589145
ATGCCGT66250.09.19214145
CCAGTCA470100.09.006287145
GCCGTCT60450.08.874801145
TCCAGTC495300.08.694434145
GTAGCCA236400.08.648181145
CTCCAGT553600.08.55146145
Produced by FastQC (version 0.11.5)