FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6873115
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCATAA90250.011.808649145
CTCGTAT36000.011.277573145
TCGTATG32650.011.102402145
TCTCGTA40800.010.483878145
AACTCCA342300.09.806277145
CCAGTCA258500.09.703885145
AGTCACC209500.09.689561145
GTCTGAA458700.09.657007145
GTCACCT202400.09.6354475145
TAATCTC77500.09.635308145
ACGTCTG470800.09.609001145
CATAATC87200.09.561179145
CGTCTGA432800.09.497864145
CACACGT567950.09.497141145
ACACGTC525200.09.483357145
CTGAACT418200.09.413386145
CAGTCAC253400.09.355591145
TGGCATA116250.09.354669145
TATGCCG24900.09.3171145
TCTGAAC429250.09.23862145
Produced by FastQC (version 0.11.5)