FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7706274
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG44050.013.824845145
ATCTCGT56500.013.729737145
TCTCGTA52800.012.083025145
TATGCCG32100.011.744247145
CGTATGC37300.011.467536145
CCAGTCA352550.010.61099145
GTCACAC260450.010.54974145
TCCAGTC374450.010.493791145
AGTCACA309150.010.318353145
CTCGTAT48350.09.896335145
TCACACA273700.09.880092145
CTCCAGT425150.09.771008145
CGTCTGA622850.09.684267145
AACTCCA475350.09.654219145
GAACTCC526650.09.41588145
GTCTGAA638100.09.259676145
ACGTCTG673850.09.241806145
CAGTCAC342000.09.200057145
TGAACTC546200.09.065587145
CACGTCT728800.09.032426145
Produced by FastQC (version 0.11.5)