FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005688910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005688910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9750315
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG20500.028.644087145
CGCCGTA94200.014.545033145
TGGTCGC153400.012.570718145
GTGGTCG172900.012.326963145
GCCGTAT90650.011.915772145
CCGTATC87750.011.731269145
GTCGCCG133650.011.445039145
TCGCCGT117100.011.391074145
TCTCGGT277900.011.191093145
CGGTGGT222750.010.96771145
GGTCGCC159650.010.71635145
TCGGTGG260350.010.692454145
GATCTCG350250.010.348935145
CTCGGTG288500.010.2270975145
GAGTGTA564850.010.164729145
CGTATCA77800.010.156654145
TAGATCT415700.09.678693145
AGATCTC401950.09.613001145
GTAGATC541600.09.490112145
AGTGTAG536250.09.368493145
Produced by FastQC (version 0.11.5)